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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_78193104_78194316_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78193104 - 78194316
Intron Length:
1213

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TAATATTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTCCATTTAATA
Flanking Amino Acid:
FCWYCLESLDDDFLLIHYDK
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
81.4
26.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
75.5
0.57
0.9
70.2
40.4
Minor 5ss
32
-2.1
2.7
37.8
40.1
Minor BPS
61.7
0.36
1.5
69.44
37.2

Associated Gene:

Gene:
RNF144A
Ensembl Gene ID:
ENSAPLG00000006187
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033616
78189298 - 78231953
42656
ENSAPLT00000020767
78189553 - 78247398
57846
ENSAPLT00000006421
78189553 - 78211836
22284