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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_78194465_78196150_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
78194465 - 78196150
Intron Length:
1686

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAGTAT
5'SS Class:
major
3'SS Sequence:
CTCTCTCCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCACAT
U12 Branch Point Sequence:
GAGTTCTCCACT
Flanking Amino Acid:
MPISFLPGETSSVFKMEEDD
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
69
38.3
Major BPS
62.5
0.31
1.2
69
38.9
Major PPT
77.8
0.62
0.7
72
26.2
Minor 5ss
36.4
-1.5
3.7
54.5
49.7
Minor BPS
48.3
-0
2
65.78
44.6

Associated Gene:

Gene:
RNF144A
Ensembl Gene ID:
ENSAPLG00000006187
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033616
78189298 - 78231953
42656
ENSAPLT00000020767
78189553 - 78247398
57846
ENSAPLT00000006421
78189553 - 78211836
22284