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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_78196359_78197350_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78196359 - 78197350
Intron Length:
992

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGATGTAT
5'SS Class:
major
3'SS Sequence:
TATCCCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TATCCCTTTACA
Flanking Amino Acid:
QRYKKLQFEREVLLDPCRTW
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
73.6
32.8
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
82.9
0.74
0.8
76.4
31.8
Minor 5ss
33
-1.9
3.3
46.5
48.8
Minor BPS
70.5
0.64
1.6
78.44
37.2

Associated Gene:

Gene:
RNF144A
Ensembl Gene ID:
ENSAPLG00000006187
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033616
78189298 - 78231953
42656
ENSAPLT00000020767
78189553 - 78247398
57846
ENSAPLT00000006421
78189553 - 78211836
22284