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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_78197412_78197611_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78197412 - 78197611
Intron Length:
200

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTCAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
CTTTCTTCAACA
Flanking Amino Acid:
PKRGHLQENEIECMVASEIM
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
89.6
24.2
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
80.8
0.69
0.8
77.3
30
Minor 5ss
57.8
0.27
2.3
75.5
40.6
Minor BPS
71.7
0.68
1.5
79.34
37.2

Associated Gene:

Gene:
RNF144A
Ensembl Gene ID:
ENSAPLG00000006187
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006421
78189553 - 78211836
22284
ENSAPLT00000033616
78189298 - 78231953
42656
ENSAPLT00000020767
78189553 - 78247398
57846