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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_78197717_78247188_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78197717 - 78247188
Intron Length:
49472

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGGGCG
5'SS Class:
major
3'SS Sequence:
GGCTCTCCTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
GAATAGTTAAGT
Flanking Amino Acid:
TLPGRGWSGACLKQYVELLI
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
61.7
43
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
72.9
0.52
0.9
65
36.5
Minor 5ss
30
-2.3
3.5
39.7
45.8
Minor BPS
45.4
-0.2
2.4
64.04
45.4

Associated Gene:

Gene:
RNF144A
Ensembl Gene ID:
ENSAPLG00000006187
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020767
78189553 - 78247398
57846