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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_78211386_78231863_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
78211386 - 78231863
Intron Length:
20478

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAGGCGTT
5'SS Class:
major
3'SS Sequence:
CTCTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAC
U12 Branch Point Sequence:
AGTATCTTGACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1.1
68.8
42.2
Major BPS
73.9
0.59
1
65.3
41.6
Major PPT
85.8
0.81
0.8
83.6
31.4
Minor 5ss
41
-1
3.7
60.4
46.7
Minor BPS
68.4
0.66
1.3
78.78
36.9

Associated Gene:

Gene:
RNF144A
Ensembl Gene ID:
ENSAPLG00000006187
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033616
78189298 - 78231953
42656