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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_78252094_78254083_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78252094 - 78254083
Intron Length:
1990

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATTG
5'SS Class:
strong_major
3'SS Sequence:
TGATATATTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTATATTAATT
Flanking Amino Acid:
SCLVPESNQKMRDSYLILDE
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
74.9
36.1
Major BPS
100
1.24
0.5
100
0
Major PPT
73.6
0.53
1
66.1
43.7
Minor 5ss
40.9
-1
3.2
55.7
48.5
Minor BPS
62.3
0.46
1.6
78.52
37.4

Associated Gene:

Gene:
RSAD2
Ensembl Gene ID:
ENSAPLG00000006016
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006241
78251384 - 78258833
7450