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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_78254294_78254856_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
78254294 - 78254856
Intron Length:
563

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATACATT
5'SS Class:
weak_major
3'SS Sequence:
GTAATGATGTCAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
GTATTTGTAATG
Flanking Amino Acid:
VLLMDCKENMSVILKASKVL
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1
69.5
40.7
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
58.3
0.19
1.2
55.3
48.4
Minor 5ss
53.2
0.11
2.6
71.4
41
Minor BPS
48.5
-0.2
2
55.88
40.3

Associated Gene:

Gene:
RSAD2
Ensembl Gene ID:
ENSAPLG00000006016
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006241
78251384 - 78258833
7450