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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_78254957_78258111_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
78254957 - 78258111
Intron Length:
3155

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAT|GCACAGGAG
5'SS Class:
weak_major
3'SS Sequence:
ATTTGCTTCAGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTACACTTAGTT
Flanking Amino Acid:
WFKKYGKRKSINRCTHMIFQ
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58
0.19
1.4
51.9
42.2
Major BPS
85
0.87
0.8
85.6
23
Major PPT
57.1
0.16
1.7
65.1
40.7
Minor 5ss
19
-3.6
4.3
31.3
43.5
Minor BPS
56.7
0.29
1.8
75.85
40.4

Associated Gene:

Gene:
RSAD2
Ensembl Gene ID:
ENSAPLG00000006016
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006241
78251384 - 78258833
7450