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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7826158_7835012_R

Intron Information:

Intron Rank:
145342
Intron Class:
major
Intron Phase:
Intron Coordinates:
7826158 - 7835012
Intron Length:
8855

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGATGA
5'SS Class:
major
3'SS Sequence:
CTTTCTTTCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCTAG
U12 Branch Point Sequence:
TCTTTCTTTCCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
64.8
37.9
Major BPS
47.9
-0.1
1.7
52.4
44.8
Major PPT
82.7
0.74
0.7
76.7
31.9
Minor 5ss
30.5
-2.2
3.2
38.3
46.7
Minor BPS
45.4
-0.2
3.6
79.16
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025603
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033420
7825063 - 7835119
10057