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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_78298410_78298480_F

Intron Information:

Intron Rank:
142756
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
78298410 - 78298480
Intron Length:
71

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAATGTAA
5'SS Class:
major
3'SS Sequence:
TAGTCCTGTAAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TGTACAAGAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.53
1.1
66.5
34.9
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
59.8
0.22
1.2
59.7
40.6
Minor 5ss
36.3
-1.6
3.3
43.5
46
Minor BPS
46.5
-0.1
2
69.39
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026972
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028791
78298377 - 78300655
2279