About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_78403452_78404581_R

Intron Information:

Intron Rank:
142504
Intron Class:
major
Intron Phase:
Intron Coordinates:
78403452 - 78404581
Intron Length:
1130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGTAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGCATTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTAAATAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.8
77
28.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
76.2
0.59
0.9
69.8
35.4
Minor 5ss
30.6
-2.2
3.2
37.1
47.5
Minor BPS
52.4
0.07
2
72.58
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023957
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031301
78403370 - 78433145
29776