Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_78419889_78448450_R

Intron Information:

Intron Rank:

142503

Intron Class:

major

Intron Phase:

Intron Coordinates:

78419889 - 78448450

Intron Length:

28562

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGGCCA

5'SS Class:

strong_major

3'SS Sequence:

TTCTTGCATACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TAATTTTTAATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.8

0.8

0.9

68.4

38.2

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

78.5

0.64

0.9

72.9

36.6

Minor 5ss

25.6

-2.8

30.5

42.8

Minor BPS

0.83

1.1

81.34

34.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023957

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030460

78416583 - 78448555

31973