About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_78547665_78565327_R

Intron Information:

Intron Rank:
144327
Intron Class:
major
Intron Phase:
Intron Coordinates:
78547665 - 78565327
Intron Length:
17663

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTTTACAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTTAA
U12 Branch Point Sequence:
TTTGCTTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
77.6
31.5
Major BPS
60.9
0.27
1
51.6
35
Major PPT
67.9
0.4
1.1
68.6
41.2
Minor 5ss
47.6
-0.2
2.4
62.3
42.5
Minor BPS
66.7
0.52
1.7
78.96
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024915
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029653
78547645 - 78567467
19823