Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_78676646_78679096_F

Intron Information:

Intron Rank:

151390

Intron Class:

major

Intron Phase:

Intron Coordinates:

78676646 - 78679096

Intron Length:

2451

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTAATGGGC

5'SS Class:

major

3'SS Sequence:

ATCTGCTTTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTTAT

U12 Branch Point Sequence:

TTTCTCTTATGT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.7

0.37

1.2

58.4

40.6

Major BPS

79.1

0.72

69.3

38.4

Major PPT

79.8

0.67

0.9

73.2

36.6

Minor 5ss

32.1

-2

3.6

45.4

43.3

Minor BPS

58.9

0.36

1.9

80.81

41.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000031247

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036079

78676073 - 78681588

5516