Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_78687175_78698397_R

Intron Information:

Intron Rank:

150455

Intron Class:

major

Intron Phase:

Intron Coordinates:

78687175 - 78698397

Intron Length:

11223

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAGAATA

5'SS Class:

strong_major

3'SS Sequence:

CTTCTGCACACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAG

U12 Branch Point Sequence:

AAATGCTCAACC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.4

0.81

0.9

80.8

33.7

Major BPS

0.65

1.5

85.7

34.9

Major PPT

70.9

0.47

0.9

64.9

35.5

Minor 5ss

36.6

-1.5

41.3

44.8

Minor BPS

52.2

0.05

63.65

41.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028440

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047190

78686234 - 78698913

12680