About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_78696613_78704890_F

Intron Information:

Intron Rank:
125796
Intron Class:
major
Intron Phase:
Intron Coordinates:
78696613 - 78704890
Intron Length:
8278

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTTAT
U12 Branch Point Sequence:
CAAGCTTTATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
66.1
0.4
1.3
59.6
46.8
Major PPT
90.3
0.91
0.6
88.3
21.3
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
47.8
-0.1
1.7
51.54
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017765
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023258
78696387 - 78705666
9280