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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_78698576_78708682_R

Intron Information:

Intron Rank:
150451
Intron Class:
major
Intron Phase:
Intron Coordinates:
78698576 - 78708682
Intron Length:
10107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTGTC
5'SS Class:
major
3'SS Sequence:
TTTCACTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TGTAAATTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
74.2
34.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
83
0.74
0.8
80.8
30.7
Minor 5ss
43.4
-0.7
3.1
61.2
43.7
Minor BPS
50.8
0.1
1.9
73.95
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028440
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027629
78691671 - 78710197
18527