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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_78735104_78735538_R

Intron Information:

Intron Rank:
152288
Intron Class:
major
Intron Phase:
Intron Coordinates:
78735104 - 78735538
Intron Length:
435

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGGAGG
5'SS Class:
major
3'SS Sequence:
TTTCTTTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
AGCTCTTGATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1
58.7
45.5
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
91.6
0.94
0.6
84.9
29.9
Minor 5ss
37.9
-1.4
3.1
45
45
Minor BPS
51.3
0.12
1.7
67.88
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029532
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023417
78735017 - 78756729
21713