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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_78746290_78756613_R

Intron Information:

Intron Rank:
152290
Intron Class:
major
Intron Phase:
Intron Coordinates:
78746290 - 78756613
Intron Length:
10324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
CTTACAATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TGTCTTACAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
74.1
38.4
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
74.3
0.55
0.9
66.9
38.1
Minor 5ss
33.3
-1.9
2.8
40
45.7
Minor BPS
47.2
-0.1
1.7
67.05
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029532
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023417
78735017 - 78756729
21713