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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_78839504_78929548_F

Intron Information:

Intron Rank:
135887
Intron Class:
major
Intron Phase:
Intron Coordinates:
78839504 - 78929548
Intron Length:
90045

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAAGTAT
5'SS Class:
major
3'SS Sequence:
TCTTTCCTCTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTTTTTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
70.7
35.4
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
82.1
0.72
0.7
81.3
23.8
Minor 5ss
37.9
-1.4
3.5
51.8
47.3
Minor BPS
70.1
0.71
1.5
86.64
33.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023178
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037139
78839369 - 78967259
127891