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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_78910957_78913467_F

Intron Information:

Intron Rank:
135885
Intron Class:
major
Intron Phase:
Intron Coordinates:
78910957 - 78913467
Intron Length:
2511

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCTGCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TGGACTTTACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
78
38.6
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
78
0.63
0.9
73.8
36.9
Minor 5ss
38.7
-1.3
2.8
49.1
46.7
Minor BPS
49.6
0.05
1.8
66.54
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023178
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040837
78839369 - 78914571
75203
ENSAPLT00000033559
78839369 - 78915663
76295