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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_78912797_78914818_R

Intron Information:

Intron Rank:
132711
Intron Class:
major
Intron Phase:
Intron Coordinates:
78912797 - 78914818
Intron Length:
2022

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
ACTTTGCTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATATTTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
78
38.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
76.9
0.61
0.8
74
36.1
Minor 5ss
38.7
-1.3
2.8
49.1
46.7
Minor BPS
60
0.39
1.9
81.67
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018636
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035822
78906745 - 78914860
8116