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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_78913566_78915470_F

Intron Information:

Intron Rank:
135886
Intron Class:
major
Intron Phase:
Intron Coordinates:
78913566 - 78915470
Intron Length:
1905

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTACATCCA
5'SS Class:
major
3'SS Sequence:
TTATTTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.3
0.31
1.2
58
40.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
87.5
0.84
0.7
83.7
31.1
Minor 5ss
35.2
-1.7
3.2
45.9
42.5
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023178
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033559
78839369 - 78915663
76295