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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_78975747_78976519_R

Intron Information:

Intron Rank:
138802
Intron Class:
major
Intron Phase:
Intron Coordinates:
78975747 - 78976519
Intron Length:
773

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACATA
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
ATTTTTTTAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
80.4
34.2
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
81
0.7
1
82.5
32.7
Minor 5ss
42.3
-0.8
3
57.2
47.1
Minor BPS
68.2
0.43
1.4
70.46
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022183
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043052
78974054 - 78976864
2811