Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_78993175_79026240_R

Intron Information:

Intron Rank:

148200

Intron Class:

major

Intron Phase:

Intron Coordinates:

78993175 - 79026240

Intron Length:

33066

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAATGG

5'SS Class:

major

3'SS Sequence:

TGATTCTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTGAT

U12 Branch Point Sequence:

GTGTTTGTGATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.7

0.7

65.8

40.9

Major BPS

81.2

0.78

1.1

71.4

45.1

Major PPT

82.8

0.74

0.9

77.2

36.8

Minor 5ss

36.7

-1.5

3.1

47.6

47.9

Minor BPS

47.7

-0.1

39.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027061

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034263

78984575 - 79026821

42247