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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_79064724_79072020_R

Intron Information:

Intron Rank:
133033
Intron Class:
major
Intron Phase:
Intron Coordinates:
79064724 - 79072020
Intron Length:
7297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCACTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTCTTTTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
78.9
0.65
0.8
71.2
34.4
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
64.5
0.54
1.7
84.55
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018809
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031227
79064542 - 79079998
15457