About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_79072139_79079117_R

Intron Information:

Intron Rank:
133034
Intron Class:
major
Intron Phase:
Intron Coordinates:
79072139 - 79079117
Intron Length:
6979

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TATGTATACTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
AACTGATAAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.7
89.7
22.4
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
69.8
0.45
1
67
42.9
Minor 5ss
34
-1.8
3.2
48.5
47.2
Minor BPS
45.5
-0.2
2.2
64.53
45.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018809
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035975
79071354 - 79084545
13192
ENSAPLT00000031227
79064542 - 79079998
15457