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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_79135106_79151284_R

Intron Information:

Intron Rank:
154671
Intron Class:
major
Intron Phase:
Intron Coordinates:
79135106 - 79151284
Intron Length:
16179

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CATCTCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CAATTTTAAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
0.9
71.6
40.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
80.9
0.7
0.8
77.3
31
Minor 5ss
34.1
-1.8
3
41.6
39
Minor BPS
55.8
0.26
1.7
68.93
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030792
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031624
79135053 - 79158458
23406