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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_79151480_79151579_R

Intron Information:

Intron Rank:
154670
Intron Class:
major
Intron Phase:
Intron Coordinates:
79151480 - 79151579
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCCATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.6
1.15
0.7
90.2
25.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
75.8
0.58
0.8
70
29.7
Minor 5ss
28.5
-2.5
3.9
43.8
43.9
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030792
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020200
79146323 - 79152067
5745