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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_79151480_79158339_R

Intron Information:

Intron Rank:
154672
Intron Class:
major
Intron Phase:
Intron Coordinates:
79151480 - 79158339
Intron Length:
6860

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTATGTATT
5'SS Class:
major
3'SS Sequence:
TCTCCCCATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
85.6
30.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
75.8
0.58
0.8
70
29.7
Minor 5ss
50.8
0.03
2.5
73.1
36.3
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030792
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042803
79146323 - 79158458
12136
ENSAPLT00000031624
79135053 - 79158458
23406