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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_79158852_79160612_F

Intron Information:

Intron Rank:
133481
Intron Class:
major
Intron Phase:
Intron Coordinates:
79158852 - 79160612
Intron Length:
1761

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAAACC
5'SS Class:
major
3'SS Sequence:
CTTATGTTGCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCTATCTTAAGA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
66
38
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
71.8
0.49
1.1
65
45.5
Minor 5ss
33
-1.9
3.2
44.5
43
Minor BPS
63.3
0.41
1.7
71.25
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021801
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028216
79158479 - 79164463
5985