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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_79319003_79326168_R

Intron Information:

Intron Rank:
133963
Intron Class:
major
Intron Phase:
Intron Coordinates:
79319003 - 79326168
Intron Length:
7166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTCATCTAG
5'SS Class:
major
3'SS Sequence:
TTTTAATATATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TGTTTTTTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.6
0.32
1.4
58.6
43
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
75.7
0.58
0.9
70.7
39
Minor 5ss
38.7
-1.3
2.9
47.4
48
Minor BPS
76.4
0.82
1
79.24
30.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019340
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024732
79307051 - 79326246
19196