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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_79324413_79326168_R

Intron Information:

Intron Rank:
133958
Intron Class:
major
Intron Phase:
Intron Coordinates:
79324413 - 79326168
Intron Length:
1756

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTCATCTAG
5'SS Class:
major
3'SS Sequence:
TTTTGCTTGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TCATATTTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.6
0.32
1.4
58.6
43
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
79.2
0.66
1
73.4
41.9
Minor 5ss
38.7
-1.3
2.9
47.4
48
Minor BPS
64
0.44
1.4
68.78
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019340
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019404
79324276 - 79326246
1971