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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7936284_7938579_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7936284 - 7938579
Intron Length:
2296

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCGGA
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTCTAT
U12 Branch Point Sequence:
TCCCCCTCTATT
Flanking Amino Acid:
AMAFKQPGREATDRKPASPA
Intron Amino Acid Position:
332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
68.5
38.7
Major BPS
49.5
-0
1.3
50.1
43.7
Major PPT
86.7
0.83
0.7
81.4
29.8
Minor 5ss
30.3
-2.3
3.3
38
46.8
Minor BPS
48.6
-0
1.9
65.6
45

Associated Gene:

Gene:
PAX1
Ensembl Gene ID:
ENSAPLG00000021065
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027880
7935589 - 7941594
6006