About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7938797_7938881_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7938797 - 7938881
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGGGC
5'SS Class:
major
3'SS Sequence:
TGCCCGTCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCCGAC
U12 Branch Point Sequence:
CGTGCCCGACGT
Flanking Amino Acid:
AADGDIKYPQPAPGLSSVGS
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.7
0.35
1.3
56.6
42.5
Major BPS
41.5
-0.5
1.3
31.7
34.4
Major PPT
66.9
0.38
0.9
57.2
38.6
Minor 5ss
34
-1.8
3.8
50.3
46.3
Minor BPS
38
-0.8
2.2
53.84
47.1

Associated Gene:

Gene:
PAX1
Ensembl Gene ID:
ENSAPLG00000021065
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027880
7935589 - 7941594
6006