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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7939025_7939963_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7939025 - 7939963
Intron Length:
939

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGGGTATC
5'SS Class:
major
3'SS Sequence:
CTGTCCCGCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGTTAAC
U12 Branch Point Sequence:
CCGGGGTTAACG
Flanking Amino Acid:
LGIRTFMEQTGALAGTEGSA
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
72.2
39.5
Major BPS
56.7
0.17
1.3
61.4
43.2
Major PPT
67.1
0.38
0.9
61.5
34.9
Minor 5ss
33
-1.9
3.1
36.5
40.9
Minor BPS
40.7
-0.8
2.4
41.78
49.2

Associated Gene:

Gene:
PAX1
Ensembl Gene ID:
ENSAPLG00000021065
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027880
7935589 - 7941594
6006