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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7940594_7941549_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
7940594 - 7941549
Intron Length:
956

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCGCG
5'SS Class:
major
3'SS Sequence:
CCGGCCCCGGCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CGGTAAC
U12 Branch Point Sequence:
GTGTCCCGGCCC
Flanking Amino Acid:
MEHTYGEVNQL
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.1
60.6
44.5
Major BPS
48.8
-0
1.3
50.7
41.5
Major PPT
56.5
0.15
1
50.3
34.1
Minor 5ss
36.2
-1.6
3.3
39.7
45.8
Minor BPS
35.8
-1.1
3.5
56.13
42.3

Associated Gene:

Gene:
PAX1
Ensembl Gene ID:
ENSAPLG00000021065
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027880
7935589 - 7941594
6006