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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7957566_7967975_R

Intron Information:

Intron Rank:
148009
Intron Class:
major
Intron Phase:
Intron Coordinates:
7957566 - 7967975
Intron Length:
10410

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCTGTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
TTCTCCTGTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
80.5
34.9
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
80.7
0.69
0.9
75.8
32.8
Minor 5ss
42.1
-0.9
2.9
55.5
43.9
Minor BPS
63.7
0.42
1.8
76.36
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026926
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020163
7956397 - 7968090
11694