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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_79628727_79628899_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79628727 - 79628899
Intron Length:
173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTTAA
5'SS Class:
major
3'SS Sequence:
CCCTCCCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
CTTTTCAGCACT
Flanking Amino Acid:
LTTELKFIKNAVAGVRETDN
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
72.9
34.4
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
71.3
0.48
0.7
64.9
23.7
Minor 5ss
38.3
-1.3
3.1
45.3
45.2
Minor BPS
47.3
-0.1
2.2
73.17
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025748
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022226
79627158 - 79650568
23411