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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_79628996_79630362_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79628996 - 79630362
Intron Length:
1367

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCTAT
5'SS Class:
strong_major
3'SS Sequence:
TATCATTTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TATTCCTGTATC
Flanking Amino Acid:
IGPPGPNGDPGIPCECSQLR
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
76.8
34.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
74.2
0.54
0.8
68.9
36.5
Minor 5ss
45.6
-0.5
2.9
64.6
46.7
Minor BPS
60.2
0.3
1.8
72.56
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025748
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022226
79627158 - 79650568
23411