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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_79630417_79631108_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79630417 - 79631108
Intron Length:
692

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCTTA
5'SS Class:
strong_major
3'SS Sequence:
TTCATGTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TATGCTTTAAAT
Flanking Amino Acid:
HGKIGPIGSKGEKGDNGDIG
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
76.7
34.9
Major BPS
100
1.24
0.5
100
0
Major PPT
78.9
0.65
0.9
76.9
37.2
Minor 5ss
62.3
0.42
2.3
73
44
Minor BPS
69.7
0.69
1.5
82.33
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025748
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022226
79627158 - 79650568
23411