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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_79670797_79671395_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79670797 - 79671395
Intron Length:
599

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAA
U12 Branch Point Sequence:
TCTGTCTTCACA
Flanking Amino Acid:
KAQQNNVEHKVETFSGVYKK
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
76.5
34.2
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
81.2
0.7
0.8
75.6
32.9
Minor 5ss
38
-1.3
3
48.1
47.6
Minor BPS
58.3
0.26
1.9
70.02
42.9

Associated Gene:

Gene:
RPS7
Ensembl Gene ID:
ENSAPLG00000002438
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002478
79670719 - 79677036
6318