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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_79671547_79673344_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
79671547 - 79673344
Intron Length:
1798

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCAAG
5'SS Class:
strong_major
3'SS Sequence:
TGTGGCATTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
GTTTTAATGATT
Flanking Amino Acid:
RTKNKQKRPRSRTLTAVHDA
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.9
77.9
38.6
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
72
0.5
1
66.8
43.8
Minor 5ss
38.7
-1.3
2.8
47.8
47.9
Minor BPS
49.3
0.03
1.9
73.58
37

Associated Gene:

Gene:
RPS7
Ensembl Gene ID:
ENSAPLG00000002438
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002478
79670719 - 79677036
6318