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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_79673410_79674931_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79673410 - 79674931
Intron Length:
1522

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAACCC
5'SS Class:
major
3'SS Sequence:
TTTCCATTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
TTTCCATTGACA
Flanking Amino Acid:
SGKHVVFIAQRRILPKPTRK
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
65.8
38.4
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
76.7
0.6
1
72.8
36.5
Minor 5ss
32.6
-2
3.1
43.3
43.8
Minor BPS
69.9
0.62
1.6
81.81
32.3

Associated Gene:

Gene:
RPS7
Ensembl Gene ID:
ENSAPLG00000002438
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002478
79670719 - 79677036
6318