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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_79675076_79676556_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79675076 - 79676556
Intron Length:
1481

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCTAG
5'SS Class:
major
3'SS Sequence:
ACTTCTATTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TCCTTCTCAACC
Flanking Amino Acid:
LRELNITAAKEIEVGGGRKA
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1.1
65.8
42.7
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
80.1
0.68
0.9
73.4
35.2
Minor 5ss
41.8
-0.9
3.2
54.5
49.7
Minor BPS
64.5
0.43
1.6
69.77
42

Associated Gene:

Gene:
RPS7
Ensembl Gene ID:
ENSAPLG00000002438
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002478
79670719 - 79677036
6318