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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_79685779_79685908_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
79685779 - 79685908
Intron Length:
130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGCCC
5'SS Class:
major
3'SS Sequence:
CGCTGTGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTGAC
U12 Branch Point Sequence:
CTGACCTGAGCT
Flanking Amino Acid:
KGRRTGVYRTWAECQQQVDR
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
63.6
39.2
Major BPS
60.1
0.25
1
51
35.6
Major PPT
71.4
0.48
1
64.2
41.5
Minor 5ss
32.2
-2
3.3
40.2
39.7
Minor BPS
51.7
0.13
1.8
69.76
46.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001961
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002006
79685330 - 79693617
8288