About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_79688035_79688510_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
79688035 - 79688510
Intron Length:
476

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
TCCTTGAATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TGTTCCTTGAAT
Flanking Amino Acid:
IGVYWGPGHPLNISERLPGR
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
81.8
31
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
71.7
0.49
1
65.4
39.1
Minor 5ss
40
-1.1
2.9
57.3
41.2
Minor BPS
78
0.96
1.3
89.63
34.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001961
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002006
79685330 - 79693617
8288