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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_79691215_79693136_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79691215 - 79693136
Intron Length:
1922

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGCATC
5'SS Class:
major
3'SS Sequence:
TTTGTCCTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAA
U12 Branch Point Sequence:
TCTTCCATACTT
Flanking Amino Acid:
NLSKGIEIQWMHIPGHAGFQ
Intron Amino Acid Position:
283

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
72.2
39.5
Major BPS
74.4
0.61
0.9
63.9
34.9
Major PPT
77
0.61
1
73
37.5
Minor 5ss
38.1
-1.3
3
43.8
43.8
Minor BPS
60.1
0.4
1.9
80.51
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001961
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002006
79685330 - 79693617
8288