Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7969421_7970171_F

Intron Information:

Intron Rank:

142407

Intron Class:

major

Intron Phase:

Intron Coordinates:

7969421 - 7970171

Intron Length:

751

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAAGTCCT

5'SS Class:

strong_major

3'SS Sequence:

CAACTGTCCACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCCCAA

U12 Branch Point Sequence:

TCTTTCCCAACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

95.3

1.07

0.7

84.4

33.5

Major BPS

63.1

0.33

1.2

72.7

34.3

Major PPT

64.5

0.33

0.9

56.9

38.2

Minor 5ss

36.9

-1.5

51.2

45.2

Minor BPS

58.8

0.36

1.9

80.59

41.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026703

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030621

7968272 - 7971110

2839